PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3656_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 284aa    MW: 30911.8 Da    PI: 8.2774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3656_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07118140427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C ff++ G C  GdrC F Hgp
  Neem_3656_f_1 118 VPCIFFQK-GLCLKGDRCAFLHGP 140
                    69******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032453IPR000571Zinc finger, CCCH-type
PfamPF156634.2E-122579No hitNo description
SMARTSM003560.00182552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7565581IPR000571Zinc finger, CCCH-type
SMARTSM003560.035780IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5114140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6115139IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4118140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5119140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVVAAQHQQQ QPQASTTSPE EEALKRNTDC VYFLASPLTC KKGSECEYRH SEYARVNPKD  60
CYFWLNGNCL NPKCGFRHPP LEGLLGTQTT VSTGSFPSLH LAATPAVQAP HHFGKQAVPC  120
IFFQKGLCLK GDRCAFLHGP NPTVNKAPQP TAVSPATEPP ALKKASSALQ KCTQEQKVPP  180
TNASKAIVVP SEANNPTLKT ENALQRNSVG IVRNAPPPSN TDNEFPQFKA SNVPPTVHGN  240
SLSLSNRLHV ARASDEQSFH HGKDTEEFFR ESSPGFDMKI NMGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470901.11e-137PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLV4U3W61e-136V4U3W6_9R
STRINGPOPTR_0008s14320.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215